Transcript: lnc-HMGB2-15:12

Basic information

LNCipedia transcript ID: lnc-HMGB2-15:12 
LNCipedia gene ID: lnc-HMGB2-15
Location (hg38): chr4:173363780-173370698
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1684 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272870.1|MICT00000274518.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.956 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-15:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HMGB2-15:12
5.0 lnc-HMGB2-15:12
5.1 lnc-HPGD-26:6
5.2 lnc-HMGB2-15:12