Transcript: lnc-HMGB2-15:4

Basic information

LNCipedia transcript ID: lnc-HMGB2-15:4 
LNCipedia gene ID: lnc-HMGB2-15
Location (hg38): chr4:173363790-173370687
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1663 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008646; NONHSAT099241
Alternative gene names: XLOC_004165; linc-HMGB2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.956 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-15:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCRG1-1:2
3.1 lnc-SCRG1-1:2
4.0 lnc-HMGB2-15:4
4.1 lnc-HMGB2-15:4
5.0 lnc-HMGB2-15:4
5.1 lnc-HPGD-26:9
5.2 lnc-HMGB2-15:4