Transcript: lnc-HMGB2-15:9

Basic information

LNCipedia transcript ID: lnc-HMGB2-15:9 
LNCipedia gene ID: lnc-HMGB2-15
Location (hg38): chr4:173363798-173369817
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 659 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008647; NONHSAT099243
Alternative gene names: XLOC_004165; linc-HMGB2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.956 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-15:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCRG1-1:5
3.1 lnc-SCRG1-1:5
4.0 lnc-HMGB2-15:9
4.1 lnc-HMGB2-15:9
5.0 lnc-HMGB2-15:9
5.1 lnc-HPGD-26:14
5.2 lnc-HMGB2-15:9