Transcript: lnc-HMGB2-16:1

Basic information

LNCipedia transcript ID: lnc-HMGB2-16:1 
LNCipedia gene ID: lnc-HMGB2-16
Location (hg38): chr4:171812136-171813343
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1208 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1078:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -127.1989 non-coding 
CPAT coding probability 60.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HMGB2-16:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HMGB2-16:1
4.1 lnc-HMGB2-16:1
5.0 lnc-HMGB2-16:1
5.1 lnc-AADAT-16:2
5.2 lnc-HMGB2-16:1