Transcript: lnc-HMGB2-1:1

Basic information

LNCipedia transcript ID: lnc-HMGB2-1:1 
LNCipedia gene ID: lnc-HMGB2-1
Ensembl Gene ID: ENSG00000248774
Ensembl Transcript ID: ENST00000507803
Location (hg38): chr4:173322206-173329694
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507803.1; RP11-798M19.3-001; OTTHUMT00000362359.1; NONHSAT099231
Alternative gene names: ENSG00000248774.1; RP11-798M19.3; OTTHUMG00000160797.1; AC097534.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -304.9627 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGB2-1:1
4.0 lnc-HMGB2-1:1
4.1 lnc-HMGB2-1:1
5.0 lnc-HMGB2-1:1
5.1 lnc-HPGD-28:1
5.2 lnc-HMGB2-1:1