Transcript: lnc-HMGB2-3:1

Basic information

LNCipedia transcript ID: lnc-HMGB2-3:1 
LNCipedia gene ID: lnc-HMGB2-3
Ensembl Gene ID: ENSG00000245213
Ensembl Transcript ID: ENST00000500914
Location (hg38): chr4:173131928-173169652
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2036 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500914; ENST00000500914.2; RP11-10K16.1-001; OTTHUMT00000362409.1; NONHSAT099216; ENST00000500914.6
Alternative gene names: ENSG00000245213; RP11-10K16.1; ENSG00000245213.2; OTTHUMG00000160808.1; ENSG00000245213.6; AC105285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.0511 non-coding 
CPAT coding probability 6.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMGB2-2:1
3.1 lnc-HMGB2-3:1
4.0 lnc-HMGB2-3:1
4.1 lnc-HMGB2-3:1
5.0 lnc-HMGB2-3:1
5.1 lnc-HPGD-34:4
5.2 lnc-HMGB2-3:1