Transcript: lnc-HMGB2-3:22

Basic information

LNCipedia transcript ID: lnc-HMGB2-3:22 
LNCipedia gene ID: lnc-HMGB2-3
RefSeq ID: NR_134242
Location (hg38): chr4:173131933-173169652
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2031 bp
Exons: 7
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134242.1
Alternative gene names: LOC101930370


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -129.0511 non-coding 
CPAT coding probability 3.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-3:22 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-HPGD-34:5
5.1 lnc-HPGD-34:5
5.2 lnc-HMGB2-3:22