Transcript: lnc-HMGB3-1:2

Basic information

LNCipedia transcript ID: lnc-HMGB3-1:2 
LNCipedia gene ID: lnc-HMGB3-1
Ensembl Gene ID: ENSG00000230153
Ensembl Transcript ID: ENST00000424539
Location (hg38): chrX:150917163-150920938
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017025; ENST00000424539; ENST00000424539.1; AF003626.1-002; OTTHUMT00000060866.1; NONHSAT138999
Alternative gene names: XLOC_008084; linc-HMGB3; ENSG00000230153; AF003626.1; ENSG00000230153.1; OTTHUMG00000024161.1; ENSG00000230153.5; AF274573.2; AF274573.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.5121 non-coding 
CPAT coding probability 9.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMGB3-1:2
3.1 lnc-HMGB3-1:2
4.0 lnc-HMGB3-1:2
4.1 lnc-HMGB3-1:2
5.0 lnc-HMGB3-1:2
5.1 lnc-MAGEA11-12:3
5.2 lnc-HMGB3-1:2