Transcript: lnc-HMGN1-4:3

Basic information

LNCipedia transcript ID: lnc-HMGN1-4:3 
LNCipedia gene ID: lnc-HMGN1-4
Location (hg38): chr21:39313962-39314443
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 482 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT082162; ENST00000539811.1
Alternative gene names: ENSG00000255568.2; BRWD1-IT2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.0426 non-coding 
CPAT coding probability 77.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HMGN1-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRWD1-IT2-1:3
4.0 lnc-BRWD1-IT2-1:3
4.1 lnc-BRWD1-IT2-1:3
5.0 lnc-BRWD1-IT2-1:3
5.1 lnc-CRYZL1-76:3
5.2 lnc-HMGN1-4:3