Transcript: lnc-HMX1-5:2

Basic information

LNCipedia transcript ID: lnc-HMX1-5:2 
LNCipedia gene ID: lnc-HMX1-5
Location (hg38): chr4:9148195-9153060
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3230 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000071765.1|HBMT00001080272.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.7964 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMX1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HMX1-4:6
5.0 lnc-HMX1-4:6
5.1 lnc-AFAP1-16:2
5.2 lnc-HMX1-5:2