Transcript: lnc-HNF1A-1:2

Basic information

LNCipedia transcript ID: lnc-HNF1A-1:2 
LNCipedia gene ID: lnc-HNF1A-1
Location (hg38): chr12:120904717-120908000
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020594; NONHSAT031253
Alternative gene names: XLOC_009911; linc-HNF1A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.0119 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HNF1A-1:2 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HNF1A-1:2
3.1 lnc-HNF1A-1:2
4.0 lnc-HNF1A-1:2
4.1 lnc-HNF1A-1:2
5.0 lnc-HNF1A-1:2
5.1 lnc-COX6A1-12:6
5.2 lnc-HNF1A-1:2