Transcript: lnc-HNF1B-2:5

Basic information

LNCipedia transcript ID: lnc-HNF1B-2:5 
LNCipedia gene ID: lnc-HNF1B-2
Location (hg38): chr17:37844305-37845136
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025617
Alternative gene names: XLOC_012454; linc-HNF1B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.6046 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HNF1B-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HNF1B-2:2
3.1 lnc-HNF1B-2:2
4.0 lnc-TBC1D3-2:3
4.1 lnc-TBC1D3-2:3
5.0 lnc-TBC1D3-2:3
5.1 lnc-SRCIN1-35:2
5.2 lnc-HNF1B-2:5