Transcript: lnc-HNRNPA2B1-9:1

Basic information

LNCipedia transcript ID: lnc-HNRNPA2B1-9:1 
LNCipedia gene ID: lnc-HNRNPA2B1-9
Location (hg38): chr7:26024571-26097303
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1637 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_3383_chr7:26064190-26136923_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
MIGDGLDTVLDELR 92.3076923076923% antisense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1246 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HNRNPA2B1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HNRNPA2B1-9:1
4.0 lnc-HNRNPA2B1-9:1
4.1 lnc-HNRNPA2B1-9:1
5.0 lnc-HNRNPA2B1-9:1
5.1 lnc-SKAP2-16:1
5.2 lnc-HNRNPA2B1-9:1