Transcript: lnc-HNRNPU-1:1

Basic information

LNCipedia transcript ID: lnc-HNRNPU-1:1 
LNCipedia gene ID: lnc-HNRNPU-1
Location (hg38): chr1:244845167-244855497
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 496 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000475997.1; HNRNPU-AS1-002; OTTHUMT00000097167.1; NONHSAT010659
Alternative gene names: ENSG00000188206.5; HNRNPU-AS1; OTTHUMG00000040397.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 94.2177 coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HNRNPU-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HNRNPU-1:1
4.0 lnc-HNRNPU-1:1
4.1 lnc-HNRNPU-1:1
5.0 lnc-HNRNPU-1:1
5.1 lnc-CHML-43:3
5.2 lnc-HNRNPU-1:1

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