Transcript: lnc-HOMER2-2:2

Basic information

LNCipedia transcript ID: lnc-HOMER2-2:2 ?
LNCipedia gene ID: lnc-HOMER2-2
Location (hg38): chr15:82958130-82985868
Strand: -
Class: intronic
Transcript size: 1261 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500334; TCONS_00023251; NONHSAT047876
Alternative gene names: ENSG00000245763; XLOC_011554; linc-HOMER2; AC022558.1


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -74.9897 non-coding ?
CPAT coding probability 3.43% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOMER2-2:2 yes no

Available literature

No linked literature available at this time.


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-C15orf40-1:1
4.0 lnc-HOMER2-2:2
4.1 lnc-HOMER2-2:2
3.1 lnc-C15orf40-2:1