Transcript: lnc-HOOK1-2:1

Basic information

LNCipedia transcript ID: lnc-HOOK1-2:1 
LNCipedia gene ID: lnc-HOOK1-2
Ensembl Gene ID: ENSG00000238242
Ensembl Transcript ID: ENST00000456878
Location (hg38): chr1:60114875-60149679
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000213; ENST00000456878; ENST00000456878.1; RP11-575B7.3-001; OTTHUMT00000024949.1; NONHSAT003582
Alternative gene names: XLOC_000224; linc-NFIA-3; ENSG00000238242; RP11-575B7.3; ENSG00000238242.1; OTTHUMG00000008994.1; AC097066.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.9638 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOOK1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOOK1-2:1
3.1 lnc-HOOK1-2:1
4.0 lnc-HOOK1-2:1
4.1 lnc-HOOK1-2:1
5.0 lnc-HOOK1-2:1
5.1 lnc-USP1-23:1
5.2 lnc-HOOK1-2:1