Transcript: lnc-HOXA10-1:5

Basic information

LNCipedia transcript ID: lnc-HOXA10-1:5 
LNCipedia gene ID: lnc-HOXA10-1
Location (hg38): chr7:27162600-27169444
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1393 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000497089
Alternative gene names: ENSG00000257667; RP1-170O19.21


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 451.4631 coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXA10-1:5 no no no no

Available literature

  1. Jalali (2013), Systematic transcriptome wide analysis of lncRNA-miRNA interactions., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1-170O19.20.1-1:4
3.1 lnc-HOXA9-1:4
4.0 lnc-HOXA9-1:4
4.1 lnc-HOXA9-1:4
5.0 lnc-HOXA9-1:4
5.1 lnc-HOXA7-3:5
5.2 lnc-HOXA10-1:5