Transcript: lnc-HOXA13-2:1

Basic information

LNCipedia transcript ID: lnc-HOXA13-2:1 
LNCipedia gene ID: lnc-HOXA13-2
Ensembl Gene ID: ENSG00000253508
Ensembl Transcript ID: ENST00000523331
Location (hg38): chr7:27186573-27193448
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523331.1; RP1-170O19.14-001; OTTHUMT00000358744.1; NONHSAT119707
Alternative gene names: ENSG00000253508.1; RP1-170O19.14; OTTHUMG00000170067.1; AC004080.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.8097 non-coding 
CPAT coding probability 12.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXA13-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXA13-2:1
4.0 lnc-HOXA13-2:1
4.1 lnc-HOXA13-2:1
5.0 lnc-HOXA13-2:1
5.1 lnc-HOXA7-5:1
5.2 lnc-HOXA13-2:1