Transcript: lnc-HOXA13-5:1

Basic information

LNCipedia transcript ID: lnc-HOXA13-5:1 
LNCipedia gene ID: lnc-HOXA13-5
Location (hg38): chr7:27229336-27235873
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013752; NONHSAT119721
Alternative gene names: XLOC_006391; linc-HOXA13-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.8379 non-coding 
CPAT coding probability 4.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXA13-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1-170O19.17.1-1:1
3.1 lnc-RP1-170O19.17.1-3:1
4.0 lnc-RP1-170O19.17.1-3:1
4.1 lnc-RP1-170O19.17.1-3:1
5.0 lnc-RP1-170O19.17.1-3:1
5.1 lnc-HOXA7-10:1
5.2 lnc-HOXA13-5:1