Transcript: lnc-HOXB4-1:1

Basic information

LNCipedia transcript ID: lnc-HOXB4-1:1 
LNCipedia gene ID: lnc-HOXB4-1
Ensembl Gene ID: ENSG00000257178
Ensembl Transcript ID: ENST00000548801
Location (hg38): chr17:48579630-48582259
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2630 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548801.1; hsa-mir-10a.1-001; OTTHUMT00000408085.1; NONHSAT054421
Alternative gene names: ENSG00000257178.1; hsa-mir-10a; OTTHUMG00000170223.1; ENSG00000257178.2; MIR10A; ENSG00000257178.3; RP11-357H14.16; ENSG00000257178.4; ENSG00000257178.5; AC103702.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.1159 non-coding 
CPAT coding probability 9.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXB4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXB4-1:1
4.0 lnc-HOXB4-1:1
4.1 lnc-HOXB4-1:1
5.0 lnc-HOXB4-1:1
5.1 lnc-ZNF652-27:1
5.2 lnc-HOXB4-1:1