Transcript: lnc-HOXB8-1:11

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:11 
LNCipedia gene ID: lnc-HOXB8-1
Location (hg38): chr17:48621201-48646852
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2328 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272763.1|ENCT00000184946.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 154.4126 coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXB8-1:11 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HOXB8-1:11
5.0 lnc-HOXB8-1:11
5.1 lnc-ZNF652-24:4
5.2 lnc-HOXB8-1:11