Transcript: lnc-HOXB8-1:12

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:12 
LNCipedia gene ID: lnc-HOXB8-1
Location (hg38): chr17:48630262-48639320
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6747 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272763.1|HBMT00000631083.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -103.5224 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXB8-1:12 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HOXB8-1:12
5.0 lnc-HOXB8-1:12
5.1 lnc-ZNF652-24:7
5.2 lnc-HOXB8-1:12