Transcript: lnc-HOXB8-1:4

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:4 
LNCipedia gene ID: lnc-HOXB8-1
Location (hg38): chr17:48636539-48639285
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025232; NONHSAT054463
Alternative gene names: XLOC_012505; linc-HOXB9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.7713 non-coding 
CPAT coding probability 12.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXB8-1:4 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXB7-1:3
3.1 lnc-HOXB7-1:3
4.0 lnc-HOXB8-1:4
4.1 lnc-HOXB8-1:4
5.0 lnc-HOXB8-1:4
5.1 lnc-ZNF652-24:11
5.2 lnc-HOXB8-1:4