Transcript: lnc-HOXB8-1:5

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:5 
LNCipedia gene ID: lnc-HOXB8-1
Location (hg38): chr17:48607627-48639285
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3929 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000567101.1; RP11-357H14.19-001; OTTHUMT00000358099.2
Alternative gene names: ENSG00000260027.1; RP11-357H14.19; OTTHUMG00000159906.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 410.8828 coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXB8-1:5 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXB7-1:4
4.0 lnc-HOXB8-1:5
4.1 lnc-HOXB8-1:5
5.0 lnc-HOXB8-1:5
5.1 lnc-ZNF652-24:12
5.2 lnc-HOXB8-1:5