Transcript: lnc-HOXB8-1:6

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:6 
LNCipedia gene ID: lnc-HOXB8-1
Ensembl Gene ID: ENSG00000272763
Ensembl Transcript ID: ENST00000608940
Location (hg38): chr17:48636538-48639285
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608940.1
Alternative gene names: ENSG00000272763.1; RP11-357H14.17; AC103702.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.7713 non-coding 
CPAT coding probability 12.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXB8-1:6 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXB7-1:7
4.0 lnc-HOXB8-1:6
4.1 lnc-HOXB8-1:6
5.0 lnc-HOXB8-1:6
5.1 lnc-ZNF652-24:13
5.2 lnc-HOXB8-1:6