Transcript: lnc-HOXB8-1:7

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:7 
LNCipedia gene ID: lnc-HOXB8-1
Ensembl Gene ID: ENSG00000272763
Ensembl Transcript ID: ENST00000425510
Location (hg38): chr17:48636546-48639110
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025233; ENST00000425510.1; RP11-357H14.20-001; OTTHUMT00000255665.1; NONHSAT054464
Alternative gene names: XLOC_012505; linc-HOXB9; ENSG00000233283.2; RP11-357H14.20; OTTHUMG00000170233.1; ENSG00000272763.1; RP11-357H14.17; AC103702.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -521.2129 non-coding 
CPAT coding probability 29.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXB8-1:7 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXB7-1:4
3.1 lnc-HOXB7-1:5
4.0 lnc-HOXB8-1:7
4.1 lnc-HOXB8-1:7
5.0 lnc-HOXB8-1:7
5.1 lnc-ZNF652-24:14
5.2 lnc-HOXB8-1:7