Transcript: lnc-HOXC4-4:10

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:10 
LNCipedia gene ID: lnc-HOXC4-4
RefSeq ID: NR_026656
Location (hg38): chr12:54126071-54132843
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1396 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026656.1
Alternative gene names: LOC400043


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -288.2327 non-coding 
CPAT coding probability 22.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXC4-4:10 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PDE1B-18:2
5.1 lnc-PDE1B-18:2
5.2 lnc-HOXC4-4:10