Transcript: lnc-HOXC4-4:2

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:2 
LNCipedia gene ID: lnc-HOXC4-4
Location (hg38): chr12:54142416-54144853
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 533 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020436; NONHSAT028581
Alternative gene names: XLOC_009765; linc-HNRNPA1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 12.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXC4-4:2 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXC4-4:2
3.1 lnc-HOXC4-4:2
4.0 lnc-HOXC4-4:2
4.1 lnc-HOXC4-4:2
5.0 lnc-HOXC4-4:2
5.1 lnc-PDE1B-18:7
5.2 lnc-HOXC4-4:2