Transcript: lnc-HOXC4-4:3

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:3 
LNCipedia gene ID: lnc-HOXC4-4
Location (hg38): chr12:54142511-54152739
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1645 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020437; NONHSAT028582
Alternative gene names: XLOC_009765; linc-HNRNPA1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4361 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXC4-4:3 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXC4-4:3
3.1 lnc-HOXC4-4:3
4.0 lnc-HOXC4-4:3
4.1 lnc-HOXC4-4:3
5.0 lnc-HOXC4-4:3
5.1 lnc-PDE1B-18:8
5.2 lnc-HOXC4-4:3