Transcript: lnc-HOXC4-4:4

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:4 
LNCipedia gene ID: lnc-HOXC4-4
Location (hg38): chr12:54150642-54152725
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 310 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00021139
Alternative gene names: XLOC_009765; linc-HNRNPA1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -352.8061 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXC4-4:4 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXC4-4:4
3.1 lnc-HOXC4-4:4
4.0 lnc-HOXC4-4:4
4.1 lnc-HOXC4-4:4
5.0 lnc-HOXC4-4:4
5.1 lnc-PDE1B-18:10
5.2 lnc-HOXC4-4:4