Transcript: lnc-HOXC4-4:7

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:7 
HGNC Gene Symbol: lnc-HOXC4-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2381
Ensembl Gene ID: ENSG00000250742
Ensembl Transcript ID: ENST00000508564
Location (hg38): chr12:54126098-54132843
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1369 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508564; ENST00000508564.1; RP11-834C11.4-001; OTTHUMT00000358962.1
Alternative gene names: ENSG00000250742; RP11-834C11.4; ENSG00000250742.1; OTTHUMG00000160035.1; ENSG00000250742.2; LINC02381


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -288.2327 non-coding 
CPAT coding probability 33.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXC4-4:7 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXC4-3:1
3.1 lnc-HOXC4-3:1
4.0 lnc-HOXC4-4:7
4.1 lnc-HOXC4-4:7
5.0 lnc-HOXC4-4:7
5.1 lnc-PDE1B-18:4
5.2 lnc-HOXC4-4:7