Transcript: lnc-HOXC4-4:9

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:9 
HGNC Gene Symbol: lnc-HOXC4-4    
HGNC Full Gene Name: SMUG1 antisense RNA 1
Ensembl Gene ID: ENSG00000283073
Ensembl Transcript ID: ENST00000634796
Location (hg38): chr12:54142591-54147485
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1734 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634796.1
Alternative gene names: ENSG00000283073.1; RP11-834C11.15; SMUG1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.7533 non-coding 
CPAT coding probability 47.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXC4-4:9 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HOXC4-4:9
4.1 lnc-HOXC4-4:9
5.0 lnc-HOXC4-4:9
5.1 lnc-PDE1B-18:9
5.2 lnc-HOXC4-4:9