Transcript: lnc-HOXC8-1:1

Basic information

LNCipedia transcript ID: lnc-HOXC8-1:1 
LNCipedia gene ID: lnc-HOXC8-1
Ensembl Gene ID: ENSG00000260597
Ensembl Transcript ID: ENST00000562848
Location (hg38): chr12:54019910-54022589
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2680 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562848.1; AC012531.25-001; OTTHUMT00000422086.1; NONHSAT028541
Alternative gene names: ENSG00000260597.1; AC012531.25; OTTHUMG00000173080.1; AC012531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.8686 non-coding 
CPAT coding probability 28.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXC8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXC8-1:1
4.0 lnc-HOXC8-1:1
4.1 lnc-HOXC8-1:1
5.0 lnc-HOXC8-1:1
5.1 lnc-PDE1B-21:1
5.2 lnc-HOXC8-1:1