Transcript: lnc-HPCAL1-1:20

Basic information

LNCipedia transcript ID: lnc-HPCAL1-1:20 
LNCipedia gene ID: lnc-HPCAL1-1
Location (hg38): chr2:10448716-10450794
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1744 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257135.1|ENST00000547349.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.0572 non-coding 
CPAT coding probability 10.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HPCAL1-1:20
5.0 lnc-HPCAL1-1:20
5.1 lnc-SNX17-194:2
5.2 lnc-HPCAL1-1:20