Transcript: lnc-HPCAL1-1:21

Basic information

LNCipedia transcript ID: lnc-HPCAL1-1:21 
LNCipedia gene ID: lnc-HPCAL1-1
Location (hg38): chr2:10448716-10451327
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1715 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257135.1|ENST00000553181.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -35.9317 non-coding 
CPAT coding probability 10.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-1:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HPCAL1-1:21
5.0 lnc-HPCAL1-1:21
5.1 lnc-SNX17-194:4
5.2 lnc-HPCAL1-1:21

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