Transcript: lnc-HPD-2:1

Basic information

LNCipedia transcript ID: lnc-HPD-2:1 
LNCipedia gene ID: lnc-HPD-2
Ensembl Gene ID: ENSG00000255856
Ensembl Transcript ID: ENST00000538710
Location (hg38): chr12:122007434-122020014
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 816 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538710; ENST00000538710.1; RP11-87C12.5-001; OTTHUMT00000401710.1; NONHSAT031480
Alternative gene names: ENSG00000255856; RP11-87C12.5; ENSG00000255856.1; OTTHUMG00000168950.1; ENSG00000255856.2; AC069503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.0758 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPD-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPD-1:1
3.1 lnc-HPD-2:1
4.0 lnc-HPD-2:1
4.1 lnc-HPD-2:1
5.0 lnc-HPD-2:1
5.1 lnc-SBNO1-26:4
5.2 lnc-HPD-2:1