Transcript: lnc-HPGDS-2:1

Basic information

LNCipedia transcript ID: lnc-HPGDS-2:1 
LNCipedia gene ID: lnc-HPGDS-2
Ensembl Gene ID: ENSG00000250908
Ensembl Transcript ID: ENST00000505498
Location (hg38): chr4:93318623-93319786
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 441 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505498.1; RP11-703C10.1-001; OTTHUMT00000362940.2; NONHSAT097437
Alternative gene names: ENSG00000250908.1; RP11-703C10.1; OTTHUMG00000160920.2; AC110800.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.232 non-coding 
CPAT coding probability 6.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPGDS-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HPGDS-2:1
4.0 lnc-HPGDS-2:1
4.1 lnc-HPGDS-2:1
5.0 lnc-HPGDS-2:1
5.1 lnc-GPRIN3-15:1
5.2 lnc-HPGDS-2:1