Transcript: lnc-HPRT1-8:5

Basic information

LNCipedia transcript ID: lnc-HPRT1-8:5 
LNCipedia gene ID: lnc-HPRT1-8
Ensembl Gene ID: ENSG00000235813
Ensembl Transcript ID: ENST00000440614
Location (hg38): chrX:134599457-134606254
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 938 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440614; ENST00000440614.1; RP11-308B5.2-001; OTTHUMT00000058379.1; NONHSAT138639
Alternative gene names: ENSG00000235813; RP11-308B5.2; ENSG00000235813.1; OTTHUMG00000022458.1; AL672032.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.8376 non-coding 
CPAT coding probability 50.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HPRT1-8:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPRT1-2:1
3.1 lnc-HPRT1-2:1
4.0 lnc-HPRT1-2:1
4.1 lnc-HPRT1-8:5
5.0 lnc-HPRT1-8:5
5.1 lnc-TEX13C-128:4
5.2 lnc-HPRT1-8:5