Transcript: lnc-HPS4-2:1

Basic information

LNCipedia transcript ID: lnc-HPS4-2:1 
LNCipedia gene ID: lnc-HPS4-2
Ensembl Gene ID: ENSG00000229770
Ensembl Transcript ID: ENST00000434510
Location (hg38): chr22:26161910-26163214
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029458; ENST00000434510.1; CTA-796E4.4-001; OTTHUMT00000322323.1; NONHSAT084477
Alternative gene names: XLOC_014326; linc-LRP5L-4; ENSG00000229770.1; CTA-796E4.4; OTTHUMG00000151345.1; AL022337.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.498 non-coding 
CPAT coding probability 13.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPS4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPS4-1:1
3.1 lnc-HPS4-2:1
4.0 lnc-HPS4-2:1
4.1 lnc-HPS4-2:1
5.0 lnc-HPS4-2:1
5.1 lnc-PITPNB-43:1
5.2 lnc-HPS4-2:1