Transcript: lnc-HPS6-1:1

Basic information

LNCipedia transcript ID: lnc-HPS6-1:1 
LNCipedia gene ID: lnc-HPS6-1
Location (hg38): chr10:101836296-101839275
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2272 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000507720; NONHSAT016080
Alternative gene names: ENSG00000248959; AC010789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.2056 non-coding 
CPAT coding probability 23.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPS6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPS6-1:1
3.1 lnc-HPS6-1:1
4.0 lnc-HPS6-1:1
4.1 lnc-HPS6-1:1
5.0 lnc-HPS6-1:1
5.1 lnc-SMC3-108:1
5.2 lnc-HPS6-1:1