Transcript: lnc-HRCT1-7:3

Basic information

LNCipedia transcript ID: lnc-HRCT1-7:3 
LNCipedia gene ID: lnc-HRCT1-7
Location (hg38): chr9:35930012-35937151
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 357 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00015665; ENST00000433838.1; RP11-327L3.3-001; OTTHUMT00000052397.1; NONHSAT131001
Alternative gene names: XLOC_007342; linc-RECK-2; ENSG00000231518.1; RP11-327L3.3; OTTHUMG00000019888.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.2979 non-coding 
CPAT coding probability 8.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HRCT1-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HRCT1-3:3
3.1 lnc-HRCT1-3:3
4.0 lnc-HRCT1-3:3
4.1 LINC00961:15
5.0 LINC00961:15
5.1 lnc-RECK-321:3
5.2 lnc-HRCT1-7:3