Transcript: lnc-HRH4-1:2

Basic information

LNCipedia transcript ID: lnc-HRH4-1:2 
LNCipedia gene ID: lnc-HRH4-1
Ensembl Gene ID: ENSG00000264695
Ensembl Transcript ID: ENST00000583122
Location (hg38): chr18:24489375-24491080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583122.1; RP11-178F10.2-001; OTTHUMT00000446689.1
Alternative gene names: ENSG00000264695.1; RP11-178F10.2; OTTHUMG00000179488.1; AC007922.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.9996 non-coding 
CPAT coding probability 4.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HRH4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HRH4-1:2
4.0 lnc-HRH4-1:2
4.1 lnc-HRH4-1:2
5.0 lnc-HRH4-1:2
5.1 lnc-RIOK3-29:2
5.2 lnc-HRH4-1:2