Transcript: lnc-HRH4-9:2

Basic information

LNCipedia transcript ID: lnc-HRH4-9:2 
LNCipedia gene ID: lnc-HRH4-9
Ensembl Gene ID: ENSG00000264434
Ensembl Transcript ID: ENST00000580645
Location (hg38): chr18:25302126-25302960
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 468 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580645.2
Alternative gene names: ENSG00000264434.2; CTD-2006O16.2; AC110603.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -126.8714 non-coding 
CPAT coding probability 4.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HRH4-9:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HRH4-9:2
4.1 lnc-HRH4-9:2
5.0 lnc-HRH4-9:2
5.1 lnc-RIOK3-50:2
5.2 lnc-HRH4-9:2