Transcript: lnc-HS1BP3-2:1

Basic information

LNCipedia transcript ID: lnc-HS1BP3-2:1 
LNCipedia gene ID: lnc-HS1BP3-2
Ensembl Gene ID: ENSG00000227047
Ensembl Transcript ID: ENST00000441870
Location (hg38): chr2:20499571-20501311
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441870.1; AC012065.4-001; OTTHUMT00000323902.1; NONHSAT069446
Alternative gene names: ENSG00000227047.1; AC012065.4; OTTHUMG00000151781.1; AC012065.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.9811 non-coding 
CPAT coding probability 7.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS1BP3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS1BP3-2:1
4.0 lnc-HS1BP3-2:1
4.1 lnc-HS1BP3-2:1
5.0 lnc-HS1BP3-2:1
5.1 lnc-RAD51AP2-51:1
5.2 lnc-HS1BP3-2:1