Transcript: lnc-HS3ST3A1-1:1

Basic information

LNCipedia transcript ID: lnc-HS3ST3A1-1:1 
LNCipedia gene ID: lnc-HS3ST3A1-1
Location (hg38): chr17:13633637-13634762
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1126 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000584737.1; RP11-721K1.1-001; OTTHUMT00000441676.1; NONHSAT145727
Alternative gene names: ENSG00000266137.1; RP11-721K1.1; OTTHUMG00000178351.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.5575 non-coding 
CPAT coding probability 4.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HS3ST3A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST3A1-1:1
4.0 lnc-HS3ST3A1-1:1
4.1 lnc-HS3ST3A1-1:1
5.0 lnc-HS3ST3A1-1:1
5.1 lnc-GAS7-32:1
5.2 lnc-HS3ST3A1-1:1