Transcript: lnc-HS3ST3A1-5:1

Basic information

LNCipedia transcript ID: lnc-HS3ST3A1-5:1 
LNCipedia gene ID: lnc-HS3ST3A1-5
Location (hg38): chr17:13717557-13733275
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2800 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002goc_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5001 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS3ST3A1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST3A1-5:1
4.0 lnc-HS3ST3A1-5:1
4.1 lnc-HS3ST3A1-5:1
5.0 lnc-HS3ST3A1-5:1
5.1 lnc-COPS3-97:2
5.2 lnc-HS3ST3A1-5:1