Transcript: lnc-HS3ST3B1-1:2

Basic information

LNCipedia transcript ID: lnc-HS3ST3B1-1:2 
LNCipedia gene ID: lnc-HS3ST3B1-1
Ensembl Gene ID: ENSG00000230647
Ensembl Transcript ID: ENST00000436469
Location (hg38): chr17:14374139-14421026
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 804 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025157; ENST00000436469; ENST00000436469.1; AC022816.2-001; OTTHUMT00000130000.1; NONHSAT145770
Alternative gene names: XLOC_012116; linc-ZNF286A-6; ENSG00000230647; AC022816.2; ENSG00000230647.1; OTTHUMG00000058811.1; AC022816.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.8773 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS3ST3B1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HS3ST3B1-1:2
3.1 lnc-HS3ST3B1-1:2
4.0 lnc-HS3ST3B1-1:2
4.1 lnc-HS3ST3B1-1:2
5.0 lnc-HS3ST3B1-1:2
5.1 lnc-GLP2R-42:5
5.2 lnc-HS3ST3B1-1:2