Transcript: lnc-HS3ST4-1:8

Basic information

LNCipedia transcript ID: lnc-HS3ST4-1:8 
LNCipedia gene ID: lnc-HS3ST4-1
Ensembl Gene ID: ENSG00000231876
Ensembl Transcript ID: ENST00000609586
Location (hg38): chr16:26318107-26321341
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 242 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609586.1; ENST00000609586.5
Alternative gene names: ENSG00000231876.3; AC009158.1; ENSG00000231876.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS3ST4-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST4-1:8
4.0 lnc-HS3ST4-1:8
4.1 lnc-HS3ST4-1:8
5.0 lnc-HS3ST4-1:8
5.1 lnc-SGF29-40:2
5.2 lnc-HS3ST4-1:8