Transcript: lnc-HSD17B11-1:5

Basic information

LNCipedia transcript ID: lnc-HSD17B11-1:5 
LNCipedia gene ID: lnc-HSD17B11-1
Location (hg38): chr4:87337049-87366000
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 641 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT097305
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 125.0822 coding 
CPAT coding probability 4.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HSD17B11-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSD17B11-1:5
4.0 lnc-HSD17B11-1:5
4.1 lnc-HSD17B11-1:5
5.0 lnc-HSD17B11-1:5
5.1 lnc-SPARCL1-1:12
5.2 lnc-HSD17B11-1:5