Transcript: lnc-HSF2-1:1

Basic information

LNCipedia transcript ID: lnc-HSF2-1:1 
LNCipedia gene ID: lnc-HSF2-1
Location (hg38): chr6:122585919-122588864
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 586 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000392074.2; RP11-574H13.2-001; OTTHUMT00000042030.1; NONHSAT114757
Alternative gene names: ENSG00000240283.1; RP11-574H13.2; OTTHUMG00000015486.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.6124 non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSF2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSF2-1:1
4.0 lnc-HSF2-1:1
4.1 lnc-HSF2-1:1
5.0 lnc-HSF2-1:1
5.1 lnc-TPD52L1-22:1
5.2 lnc-HSF2-1:1